{"took":1,"timed_out":false,"_shards":{"total":1,"successful":1,"skipped":0,"failed":0},"hits":{"total":{"value":2203,"relation":"eq"},"max_score":1.0,"hits":[{"_index":"registry","_type":"item","_id":"ebi.genomes","_score":1.0,"_source":{"preferredPrefix":"ebi.genomes","title":"EBI Genomes","description":"The Ensembl Genome Browser provides the best possible automatic annotation, graphical views and web-searchable datasets for a number of eukaryotic genomes including human, mouse, drosophila, anopheles, zebrafish with others to follow","organization":"EBI","keywords":["genome"],"homepage":"http://www.ebi.ac.uk/genomes","partOfCollection":"ebi","regex":"[A-Z]+\\d+","exampleId":"EF432053","miriamCuratorNotes":"portal (to various projects)","miriamCoverage":"omitted","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"eblocks","_score":1.0,"_source":{"preferredPrefix":"eblocks","title":"eBLOCKS","miriamCuratorNotes":"no resolving url","miriamCoverage":"omitted","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"ec","_score":1.0,"_source":{"preferredPrefix":"ec","altPrefix":["enzyme nomenclature","ec-code","enzyme classification","ecnumber"],"miriam":"MIR:00000004","title":"International Union of Biochemistry and Molecular Biology Nomenclature Database","pubmedId":["10812475.0"],"organization":"IUBMB","keywords":["enzyme"],"homepage":"http://www.chem.qmul.ac.uk/iubmb/","regex":"^\\d+\\.-\\.-\\.-|\\d+\\.\\d+\\.-\\.-|\\d+\\.\\d+\\.\\d+\\.-|\\d+\\.\\d+\\.\\d+\\.(n)?\\d+$","exampleId":"1.1.1.1","providerHtmlUrl":"http://www.chem.qmul.ac.uk/iubmb/$id","miriamChecked":"x","miriamCuratorNotes":"modified regex","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"ecg","_score":1.0,"_source":{"preferredPrefix":"ecg","providerBaseUri":"http://www.cvrgrid.org/files/ECGOntologyv1.owl#","bioportalOntologyId":1146.0,"abbreviation":"ECG","title":"Electrocardiography Ontology","description":"The Electrocardiography (ECG) Ontology is a Driving Biological Project of the NCBO. The ECG Ontology will contain terms for describing electrocardiograms, their capture method(s) and their waveforms.","type":"terminology","homepage":"http://www.cvrgrid.org","miriamCoverage":"omitted","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"ecgene","_score":1.0,"_ignored":["description.keyword"],"_source":{"preferredPrefix":"ecgene","title":"ECgene","description":"ECgene is a gene prediction program that combines the genome-based EST clustering and transcript assembly procedures in a coherent fashion. In addition, ECgene builds the transcript models using graph-theoretic assembly and sub-clusters EST sequences according to transcript variants, thus being one of the state-of-the-art gene predicting programs.","organization":"ECGene","keywords":["gene"],"homepage":"http://genome.ewha.ac.kr/ECgene/","miriamCuratorNotes":"incorrect link (no responses on queries)/ ","miriamCoverage":"omitted","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"echobase","_score":1.0,"_source":{"preferredPrefix":"echobase","miriam":"MIR:00000200","abbreviation":"EchoBASE","title":"EchoBASE - an integrated post-genomic database for E. coli","description":"EchoBase is a database that curates new experimental and bioinformatic information about the genes and gene products of the model bacterium Escherichia coli K-12 strain MG1655.","pubmedId":["15608209.0"],"organization":"EchoBase","keywords":["gene","gene expression"],"homepage":"http://www.ecoli-york.org/","regex":"^EB\\d+$","exampleId":"EB0170","providerHtmlUrl":"http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=$id","miriamChecked":"x","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"ecid","_score":1.0,"_source":{"preferredPrefix":"ecid","title":"EciD","miriamCuratorNotes":"no resolving url","miriamCoverage":"omitted","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"eco","_score":1.0,"_source":{"preferredPrefix":"eco","altPrefix":["evidence codes ontologyobo.eco"],"providerBaseUri":"http://purl.obolibrary.org/eco/","alternativeBaseUri":["http://purl.obofoundry.org/eco/","http://purl.obolibrary.org/eco/","http://purl.org/obo/owl/ECO#","http://identifiers.org/obo.eco/"],"miriam":"MIR:00000055","bioportalOntologyId":1012.0,"abbreviation":"ECO","title":"Evidence Code Ontology","description":"Evidence codes can be used to specify the type of supporting evidence for a piece of knowledge. This allows inference of a 'level of support' between an entity and an annotation made to an entity.","type":"terminology","keywords":["obo","ontology"],"licenseUrl":"http://www.ebi.ac.uk/Information/termsofuse.html","licenseText":"The public databases of the EBI are freely available by any individual and for any purpose","regex":"ECO:\\d{7}$","exampleId":"ECO:0000006","providerHtmlUrl":"http://www.ebi.ac.uk/ontology-lookup/?termId=$id","miriamChecked":"x","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"eco2dbase","_score":1.0,"_source":{"preferredPrefix":"eco2dbase","abbreviation":"ECO2DBASE","title":"Escherichia coli gene-protein database: a 2-D gel database","miriamCuratorNotes":"no resolving url","miriamCoverage":"omitted","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}},{"_index":"registry","_type":"item","_id":"ecocyc","_score":1.0,"_source":{"preferredPrefix":"ecocyc","abbreviation":"EcoCyc","title":"EcoCyc","description":"EcoCyc is a model organism database that describes the genome and the biochemical network of E. coli. Gene expression and other 'omics datasets can be painted onto those diagrams for analysis.","organization":"EcoCyc","keywords":["genome","gene expression"],"homepage":"http://ecocyc.org/","miriamCuratorNotes":"duplicated .compound, .gene etc","miriamCoverage":"omitted","@type":"http://semanticscience.org/resource/namespace","@context":{"preferredPrefix":"http://identifiers.org/idot/preferredPrefix","altPrefix":"http://identifiers.org/idot/alternatePrefix","providerBaseUri":"http://rdfs.org/ns/void#uriRegexPattern","alternativeBaseUri":"http://w3id.org/bio2kg/vocabulary#alternativeBaseUri","miriam":"https://www.ebi.ac.uk/miriam/main/resources/","bioportalOntologyId":"http://w3id.org/bio2kg/vocabulary#bioportalOntologyId","thedatahub":"http://w3id.org/bio2kg/vocabulary#theDataHubId","abbreviation":"http://purl.org/linguistics/gold/abbreviation","title":"http://purl.org/dc/terms/title","description":"http://purl.org/dc/terms/description","pubmedId":"http://w3id.org/bio2kg/vocabulary#pubmedId","organization":"http://purl.org/dc/terms/publisher","type":"http://www.w3.org/1999/02/22-rdf-syntax-ns#type","keywords":"http://www.w3.org/ns/dcat#keyword","homepage":"http://xmlns.com/foaf/0.1/homepage","homepageStillAvailable":"http://identifiers.org/idot/state","subNamespaceInDataset":"http://purl.org/dc/terms/isPartOf","partOfCollection":"http://purl.org/dc/terms/isPartOf","licenseUrl":"http://purl.org/dc/terms/license","licenseText":"http://purl.org/dc/terms/license","rights":"http://purl.org/dc/terms/rights","regex":"http://identifiers.org/idot/identifierPattern","exampleId":"http://identifiers.org/idot/exampleIdentifier","providerHtmlUrl":"http://identifiers.org/idot/accessPattern"}}}]}}